Tommaso Vaccari

A technical deep dive into integrating Vinardo into muDock, from molecular representation and preprocessing to CPU scoring, validation against smina, and CASF-2016 results.

C++ / HPC / Molecular Docking / Drug Discovery

A from-scratch GPT implementation, its computational cost, and experiments on arithmetic and character-level language modeling.

Neural Networks / Deep Learning / Transformers / Attention / Python

C++ integration of the Vinardo scoring function into muDock, including atom typing, PDBQT topology, pair preprocessing, CPU scoring, and validation against smina.

C++ / HPC / Molecular Docking / PDBQT

Compact GPT trained for three-digit addition, reaching about 99% accuracy across 1,000 random tests.

Python / PyTorch / Transformers

Distributed Java implementation of the Mesos board game, with TUI, JavaFX GUI, TCP and RMI networking, multi-game support, reconnection handling, and MySQL rankings.

Java / JavaFX / TCP / RMI / MVC / MySQL